I don't think either The Minish Cap will be one of them; It is particularly well received in the US and a strong title for the never-be-alive-announced GBA virtual console. Yes, we often saw around the web the Minish Cap love/hate advices and I think we can explain it by: US loves it, rest of the world hate it.
But if we look at the Zelda series only, it's hard to say anything else than both The Minish Cap, and the DS games, are among the worst of the series. Of course, that's still very good games, but those titles can't get the general positive opinion most of the other Zelda got.
They can include AlttP after all. We will get FS as a DSiware, this is the kind of weird things Nintendo can do. Just split the GBA port between a DSiware and a ambassador game.